fav.git - functional annotation for varscan

	Commit message (Collapse)	Author	Age	Files	Lines
*	fix error message when opening variants file	Brian Cully	2024-01-19	1	-1/+1
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*	don't bail on nucleotide check errors	Brian Cully	2024-01-19	1	-1/+1
\| \| \| \|	print an error message and keep going
*	remove dead code	Brian Cully	2024-01-19	1	-1/+0
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*	crash out early if codon lookup fails	Brian Cully	2022-12-12	1	-0/+2
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*	strip newlines in input before codon lookup	Brian Cully	2022-12-12	1	-0/+1
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*	put ref genome and protein ranges back	Brian Cully	2022-09-12	2	-0/+15
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*	ignore work directories	Brian Cully	2022-09-12	3	-15/+1
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*	Calculate codon starts from the start of the protein they're in.	Brian Cully	2022-07-08	1	-14/+18
\| \| \| \| \|	Turns out that the start of the genome ain't necessarily the start of a coding region.
*	Remove unused variables.	Brian Cully	2022-07-07	1	-3/+0
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*	Update notes with latest emails and babel for translating.	Brian Cully	2022-07-07	1	-4/+181
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*	Add script for converting nucleotide variance to aa variance.	Brian Cully	2022-07-07	1	-0/+107
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*	Fix up P3 to finish at STOP codon.	Brian Cully	2022-07-07	1	-1/+1
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*	Add script for printing a protein's codon sequence.	Brian Cully	2022-07-01	1	-0/+70
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*	Add codon to amino acid short code CSV file.	Brian Cully	2022-07-01	1	-0/+65
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*	Add CSV for mapping amino acid short codes to letters.	Brian Cully	2022-07-01	1	-0/+22
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*	Add header to sample start-stop sequences.	Brian Cully	2022-07-01	1	-1/+1
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*	Add worknotes and files from Siobain's email.	Brian Cully	2022-07-01	4	-0/+55