fav.git - functional annotation for varscan

	Commit message (Expand)	Author	Age	Files	Lines
*	remove dead code	Brian Cully	2024-01-19	1	-1/+0
*	crash out early if codon lookup fails	Brian Cully	2022-12-12	1	-0/+2
*	strip newlines in input before codon lookup	Brian Cully	2022-12-12	1	-0/+1
*	put ref genome and protein ranges back	Brian Cully	2022-09-12	2	-0/+15
*	ignore work directories	Brian Cully	2022-09-12	3	-15/+1
*	Calculate codon starts from the start of the protein they're in.	Brian Cully	2022-07-08	1	-14/+18
*	Remove unused variables.	Brian Cully	2022-07-07	1	-3/+0
*	Update notes with latest emails and babel for translating.	Brian Cully	2022-07-07	1	-4/+181
*	Add script for converting nucleotide variance to aa variance.	Brian Cully	2022-07-07	1	-0/+107
*	Fix up P3 to finish at STOP codon.	Brian Cully	2022-07-07	1	-1/+1
*	Add script for printing a protein's codon sequence.	Brian Cully	2022-07-01	1	-0/+70
*	Add codon to amino acid short code CSV file.	Brian Cully	2022-07-01	1	-0/+65
*	Add CSV for mapping amino acid short codes to letters.	Brian Cully	2022-07-01	1	-0/+22
*	Add header to sample start-stop sequences.	Brian Cully	2022-07-01	1	-1/+1
*	Add worknotes and files from Siobain's email.	Brian Cully	2022-07-01	4	-0/+55