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* fix error message when opening variants fileBrian Cully2024-01-191-1/+1
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* don't bail on nucleotide check errorsBrian Cully2024-01-191-1/+1
| | | | print an error message and keep going
* remove dead codeBrian Cully2024-01-191-1/+0
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* crash out early if codon lookup failsBrian Cully2022-12-121-0/+2
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* strip newlines in input before codon lookupBrian Cully2022-12-121-0/+1
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* Calculate codon starts from the start of the protein they're in.Brian Cully2022-07-081-14/+18
| | | | | Turns out that the start of the genome ain't necessarily the start of a coding region.
* Remove unused variables.Brian Cully2022-07-071-3/+0
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* Add script for converting nucleotide variance to aa variance.Brian Cully2022-07-071-0/+107