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| author | Brian Cully <bjc@kublai.com> | 2021-02-17 22:05:32 -0500 |
|---|---|---|
| committer | Brian Cully <bjc@kublai.com> | 2021-02-17 22:05:32 -0500 |
| commit | 2503329e0cc360ec7a4dae50431e41e379fe371a (patch) | |
| tree | dffd7db955a9fa1869de4c6de55b4fd057d3770b | |
| parent | 4bb133a3515fa54be34b8ec50b80d6dcbe3a0b3d (diff) | |
| download | molsim2-2503329e0cc360ec7a4dae50431e41e379fe371a.tar.gz molsim2-2503329e0cc360ec7a4dae50431e41e379fe371a.zip | |
Change org output to verbatim for first table map.
| -rw-r--r-- | NOTES.org | 39 |
1 files changed, 10 insertions, 29 deletions
@@ -48,7 +48,7 @@ Continue to mutate for 10 rounds, though not all 10 of your sequences will survi | STOP | TAA TGA TAG | #+name: aa-table-to-form -#+begin_src elisp :var table-name="amino-acid-to-codon" range="@<<$<..@>$>" +#+begin_src elisp :var table-name="amino-acid-to-codon" range="@<<$<..@>$>" :results verbatim (let ((raw-data (org-table-get-remote-range table-name range))) (seq-reduce (lambda (acc elt) (set-text-properties 0 (length elt) nil elt) @@ -60,27 +60,7 @@ Continue to mutate for 10 rounds, though not all 10 of your sequences will survi #+end_src #+RESULTS: aa-table-to-form -| STOP | TAA | TGA | TAG | | | | -| Val | GTT | GTC | GTA | GTG | | | -| Tyr | TAT | TAC | | | | | -| Trp | TGG | | | | | | -| Thr | ACT | ACC | ACA | ACG | | | -| Ser | TCT | TCC | TCA | TCG | AGT | AGC | -| Pro | CCT | CCC | CCA | CCG | | | -| Phe | TTT | TTC | | | | | -| Met | ATG | | | | | | -| Lys | AAA | AAG | | | | | -| Leu | CTT | CTC | CTA | CTG | TTA | TTG | -| Ile | ATT | ATC | ATA | | | | -| His | CAT | CAC | | | | | -| Gly | GGT | GGC | GGA | GGG | | | -| Glu | GAA | GAG | | | | | -| Gln | CAA | CAG | | | | | -| Cys | TGT | TGC | | | | | -| Asp | GAT | GAC | | | | | -| Asn | AAT | AAC | | | | | -| Arg | CGT | CGC | CGA | CGG | AGA | AGG | -| Ala | GCT | GCC | GCA | GCG | | | +: (("STOP" "TAA" "TGA" "TAG") ("Val" "GTT" "GTC" "GTA" "GTG") ("Tyr" "TAT" "TAC") ("Trp" "TGG") ("Thr" "ACT" "ACC" "ACA" "ACG") ("Ser" "TCT" "TCC" "TCA" "TCG" "AGT" "AGC") ("Pro" "CCT" "CCC" "CCA" "CCG") ("Phe" "TTT" "TTC") ("Met" "ATG") ("Lys" "AAA" "AAG") ("Leu" "CTT" "CTC" "CTA" "CTG" "TTA" "TTG") ("Ile" "ATT" "ATC" "ATA") ("His" "CAT" "CAC") ("Gly" "GGT" "GGC" "GGA" "GGG") ("Glu" "GAA" "GAG") ("Gln" "CAA" "CAG") ("Cys" "TGT" "TGC") ("Asp" "GAT" "GAC") ("Asn" "AAT" "AAC") ("Arg" "CGT" "CGC" "CGA" "CGG" "AGA" "AGG") ("Ala" "GCT" "GCC" "GCA" "GCG")) #+name: aa-table-inverted #+begin_src elisp :var table-name="amino-acid-to-codon" range="@<<$<..@>$>" @@ -175,13 +155,14 @@ Continue to mutate for 10 rounds, though not all 10 of your sequences will survi #+end_example * work steps -1. Use existing infrastructure to do codon mutation, but after mutation, need a place to select/display the amino acid from the codon group. -2. Then need to verify student amino acid selection -3. Then have student mark lethality -4. Then clone either current or previous genome to next genome -5. go back to 1 - -Additionally, every codon in the first genome must be filled in by students +1. group nucleotides by codon +2. add amino acid selection area to codon group +3. fill in the first genome’s amino acids on startup +4. Use existing infrastructure to do codon mutation, but after mutation, need a place to select/display the amino acid from the codon group. +5. Then need to verify student amino acid selection +6. Then have student mark lethality +7. Then clone either current or previous genome to next genome +8. go back to 4 * Misc ** Cartesian product fun in lisp |