worker.js


1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53

import CSVParse from './csv.mjs';

let ignoreLines = 0;
let sequenceNames = [];

function process(threshold, row) {
    const name = row[0];
    if (name === undefined || /^\s*$/.test(name)) {
        return;
    }
    if (ignoreLines > 0) {
        ignoreLines--;
        return;
    }
    sequenceNames.push(name);

    let i = 0;
    for (const col of row) {
        const val = Number(col);
        if (isNaN(val)) {
            continue;
        }
        if (val >= threshold && name !== sequenceNames[i]) {
            postMessage([name, sequenceNames[i], val]);
        }
        i++;
    }
}

onmessage = e => {
    console.debug('got message', e);
    console.debug('reading file');

    console.debug('e.data', e.data);
    const { ignoreHeader, threshold, file } = e.data;
    console.debug('threshold', threshold, 'file', file);

    const reader = new FileReader();
    reader.onload = e => {
        const parser = new CSVParse();
        for (const c of e.target.result) {
            parser.push(c);
        }
        if (ignoreHeader) {
            ignoreLines = 1;
        }
        parser.results.forEach(row => process(threshold, row));
    }
    reader.progress = e => {
        console.debug('reader.progress', e);
    }
    reader.readAsText(file);
}